WaterMicrobiologyQualityChecker
Water Microbiology
Water Microbiology Quality Checker — Control of Water Microbiological Purity
ℹ️ Utility checks microbiological quality of Purified Water (PW) and Water for Injection (WFI) according to Ph. Eur. 2.6.12 and USP <1231>:
• TAMC (Total Aerobic Microbial Count): ≤ 100 CFU/mL
• TYMC (Total Yeast and Mold Count): ≤ 10 CFU/mL
• Pseudomonas aeruginosa: Absent in 100 mL
• Coliforms: Absent in 100 mL
• Strict control of incubation conditions (TAMC: 30-35°C, 3-5 days; TYMC: 20-25°C, 5-7 days)
⚠️ CRITICAL: Detection of Pseudomonas aeruginosa or coliforms is unacceptable!
TAMC exceedance > 100 CFU/mL indicates biofilm in water purification system or sampling violation.
Usage:
WaterMicrobiologyQualityChecker.exe → demo mode (console output)
WaterMicrobiologyQualityChecker.exe input.csv output.json → evaluate your data
Input format:
BatchNumber,WaterType,TAMC_CFU_per_ml,TYMC_CFU_per_ml,PseudomonasAeruginosa,Coliforms,IncubationTemp_TAMC,IncubationTemp_TYMC,IncubationDays_TAMC,IncubationDays_TYMC
Example (0=Absent, 1=Present):
WMI-2026-PW-001,PW,5.0,2.0,0,0,32.5,22.5,4,6
— WHY IS THIS NEEDED?
Water is a main component of most dosage forms. Microbiological contamination of water can lead to product spoilage, reduced efficacy, and patient risk (especially for parenterals).
Regular bioburden monitoring is necessary for validation and maintenance of the water purification system.
⚠️ CRITICAL:
• TAMC ≤ 100 CFU/mL — standard limit for PW and WFI at point of use.
• TYMC ≤ 10 CFU/mL — control of fungal contamination.
• Sampling: Must be performed aseptically after disinfection of sampling point and flushing sufficient volume.
• Incubation: Violation of temperature regime or incubation time invalidates the test.
• Action Levels: Facility may have stricter internal limits (e.g., 50 CFU/mL) for early warning.
Key features:
• Check of total microbial counts (TAMC/TYMC)
• Control of absence of specific pathogens
• Validation of incubation parameters
• Generation of reports for microbiology lab and LIMS LabWare
• Compliance with GMP and Pharmacopoeia requirements
Critical parameters:
• TAMC: ≤ 100 CFU/mL
• TYMC: ≤ 10 CFU/mL
• Pseudomonas aeruginosa: Absent
• Coliforms: Absent
• TAMC Incubation: 30-35°C, 3-5 days
• TYMC Incubation: 20-25°C, 5-7 days
💡 Usage tips:
1. Filtration: For water with low bioburden, membrane filtration method (filtering 100 mL or more) is recommended.
2. Media: Use R2A agar for TAMC (more sensitive to water bacteria than TSA) and SDA or DG18 for TYMC.
3. Neutralization: If water contains residual disinfectants (chlorine, ozone), use neutralizers in media or during filter rinsing.
4. Trends: Analyze data dynamically. A sharp spike in bioburden even within limits may indicate a problem.
5. Biofilm: Main source of contamination is biofilm in pipes. Regular system sanitization is mandatory.
⚠️ Note: Water microbiology is an indicator of the entire water preparation system status. A positive result requires immediate investigation and possibly re-sanitization of the loop.input.csv
BatchNumber,WaterType,TAMC_CFU_per_ml,TYMC_CFU_per_ml,PseudomonasAeruginosa,Coliforms,IncubationTemp_TAMC,IncubationTemp_TYMC,IncubationDays_TAMC,IncubationDays_TYMC WMI-2026-PW-001,PW,5.0,2.0,0,0,32.5,22.5,4,6 WMI-2026-WFI-002,WFI,0.0,0.0,0,0,33.0,23.0,3,5 WMI-2026-PW-FAIL-003,PW,150.0,5.0,0,0,32.0,22.0,4,6
URS & FS — Water Microbiology
This document describes the user requirements and functional specification for WaterMicrobiologyQualityChecker. The utility is intended for QC laboratory use as a rule-based check of data prepared from an instrument, LIMS, ELN, MES or an approved input.csv.
URS — User Requirements Specification
| ID | Requirement | Criticality | Acceptance criterion |
|---|---|---|---|
| URS-001 | The utility shall accept input.csv with approved columns: BatchNumber, WaterType, TAMC_CFU_per_ml, TYMC_CFU_per_ml, PseudomonasAeruginosa, Coliforms, IncubationTemp_TAMC, IncubationTemp_TYMC, IncubationDays_TAMC, IncubationDays_TYMC. | High | The CSV file is processed without manual header editing. |
| URS-002 | The utility shall perform deterministic evaluation for “Water Microbiology” without machine learning. | High | The same input data produce the same JSON result. |
| URS-003 | The utility shall validate mandatory fields, numeric formats, flags, ranges and domain plausibility. | High | Schema and conversion errors are explicitly reported. |
| URS-004 | The utility shall generate output.json with PASS / WARNING / FAIL statuses, source values, warnings and failures. | High | The JSON result is suitable for review, deviation investigation and integration. |
| URS-005 | The documentation shall support IQ/OQ/PQ or CSV/CSA verification. | Medium | URS/FS, CSV/JSON contract and test scenarios are supplied with the utility. |
input.csv contract
| # | Field | Sample | Purpose |
|---|---|---|---|
| 1 | BatchNumber | WMI-2026-PW-001 | Input parameter for deterministic QC evaluation. |
| 2 | WaterType | PW | Input parameter for deterministic QC evaluation. |
| 3 | TAMC_CFU_per_ml | 5.0 | Input parameter for deterministic QC evaluation. |
| 4 | TYMC_CFU_per_ml | 2.0 | Input parameter for deterministic QC evaluation. |
| 5 | PseudomonasAeruginosa | 0 | Input parameter for deterministic QC evaluation. |
| 6 | Coliforms | 0 | Input parameter for deterministic QC evaluation. |
| 7 | IncubationTemp_TAMC | 32.5 | Input parameter for deterministic QC evaluation. |
| 8 | IncubationTemp_TYMC | 22.5 | Input parameter for deterministic QC evaluation. |
| 9 | IncubationDays_TAMC | 4 | Input parameter for deterministic QC evaluation. |
| 10 | IncubationDays_TYMC | 6 | Input parameter for deterministic QC evaluation. |
FS — Functional Specification
| ID | Function | Implementation |
|---|---|---|
| FS-001 | CSV import | Read input.csv; validate header, column count and encoding. |
| FS-002 | Schema validation | Check required fields and permitted input values. |
| FS-003 | Rule engine | Apply domain rules, limits and system suitability/specification checks described in the source utility description. |
| FS-004 | Status aggregation | Produce final status: FAIL for critical failure, WARNING for non-critical deviation, PASS for conformance. |
| FS-005 | JSON export | Write machine-readable output.json for LIMS/ELN/MES and QA/QC review. |
OQ/PQ scenarios
- OQ-001: a valid sample row shall be processed without schema error.
- OQ-002: a missing mandatory column shall produce a schema error.
- OQ-003: a non-numeric value in a numeric field shall produce a conversion error.
- OQ-004: a critical parameter outside the limit shall produce
FAILor a critical finding. - PQ-001: user real batches shall be checked with retention of
input.csv,output.json, utility version and checksum.
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