T1RelaxationTimePredictor
T1 Relaxation Time Predictor
Utility description: T1 Relaxation Time Predictor
T1 Relaxation Time Predictor — T1 Relaxation Time Predictor for Hyperpolarized Xenon
ℹ️ Utility predicts hyperpolarization lifetime:
• Oxygen impact (paramagnetic quenching)
• Vial wall quality impact
• Polarization level prediction at scan time
• Time to threshold calculation
⚠️ CRITICAL: Oxygen reduces T1 by tens of times!
Even 100 ppm O2 can make gas unusable within an hour.
Usage:
T1RelaxationTimePredictor.exe → demo mode (console output)
T1RelaxationTimePredictor.exe input.csv output.json → evaluate your data
Input format:
BatchNumber,ProductName,Initial_Pol_Percent,O2_ppm,Temperature_C,Field_T,Surface_Factor,Target_Time_H,Min_Req_Pol
Example:
T1-PRED-2026-001,Xe-129 Mix,40,10,20,1.5,0.95,2,5
— WHY IS THIS NEEDED?
T1 prediction is critical for HP-MRI logistics:
• Hyperpolarized xenon is unstable and tends toward thermal equilibrium
• Rate of this process (T1) depends on gas composition and storage conditions
• If T1 is too short, gas loses signal before patient can inhale it
• Utility allows calculating "window of opportunity" for study
• Helps decide: use gas now or reject batch
⚠️ CRITICAL:
• Oxygen is strong paramagnet and main enemy of T1
• Vial coating quality determines collision relaxation rate
• Prediction must account for actual transport and preparation time
• Minimum polarization threshold depends on MRI scanner sensitivity
Key features:
• Physical relaxation model accounting for impurities and walls
• Residual polarization prediction at specified time
• Time to critical threshold calculation
• Environmental factor impact assessment (O2, temperature)
Critical parameters:
• Predicted T1: > Target Time
• Predicted Pol: > Min Required
• O2 Impact Factor: < 2.0
• Time to Threshold: > Target Time
💡 Usage tips:
1. Always use most accurate oxygen content data
2. Account for actual vial quality (certified vs standard)
3. Include time buffer for unexpected clinic delays
4. If high O2 content, consider additional gas purification
5. Use prediction for patient scheduling
⚠️ Note: Unlike standard drugs with fixed shelf life, here "shelf life" dynamically changes every second depending on conditions. The utility turns complex physics into a clear gas usability schedule for clinical use.input.csv
BatchNumber,ProductName,Initial_Pol_Percent,O2_ppm,Temperature_C,Field_T,Surface_Factor,Target_Time_H,Min_Req_Pol T1-PRED-2026-001,Xe-129 (90%) + N2,40,10,20,1.5,0.95,2,5 T1-PRED-2026-002,Xe-129 (High O2),40,200,20,1.5,0.95,2,5 T1-PRED-2026-003,Xe-129 (Bad Vial),40,10,20,1.5,0.5,2,5
URS & FS — user requirements and functional specification
URS & FS — User Requirements and Functional Specification
This document defines the controlled interface and behaviour of T1RelaxationTimePredictor for “T1 Relaxation Time Predictor”. Limits from the source description are an initial configuration and shall be reconciled with the approved specification, study protocol, equipment instructions and local SOPs before production use.
Domain constraints and critical parameters
- Predicted T1: > Target Time
- Predicted Pol: > Min Required
- O2 Impact Factor: < 2.0
- Time to Threshold: > Target Time
URS — User Requirements Specification
| ID | Requirement | Criticality | Acceptance criterion |
|---|---|---|---|
| URS-001 | The utility shall accept input.csv with the exact headers defined by the data contract. | High | The file is processed without manual header renaming. |
| URS-002 | The utility shall perform a deterministic assessment for “T1 Relaxation Time Predictor”. | High | PASS / WARNING / FAIL is produced for each row. |
| URS-003 | Required fields, types, ranges, units and data consistency shall be validated before domain rules. | High | Schema errors are separated from nonconformities. |
| URS-004 | Critical limits from the description and approved local configuration shall create a critical finding. | High | A critical rule violation results in FAIL. |
| URS-005 | The result shall be written to machine-readable output.json. | High | JSON contains source values, checks, warnings and failures. |
| URS-006 | The conformity decision shall not use machine learning. | Medium | The result is reproducible from explicit rules and inputs. |
| URS-007 | Traceability of batch, source file, rule version and final status shall be retained. | High | QA/QC can reproduce the decision. |
| URS-008 | The utility shall have exactly one primary portal tag: instrumental. | Medium | The other api / instrumental / medical_devices tags are absent. |
| URS-009 | Documentation shall support IQ/OQ/PQ or equivalent CSA/CSV verification. | Medium | The contract, test scenarios and change-control rules are supplied with the utility. |
input.csv data contract
| # | Field | Type | Unit | Sample | Purpose |
|---|---|---|---|---|---|
| 1 | BatchNumber | string | as specified | T1-PRED-2026-001 | Batch/lot identifier for traceability. |
| 2 | ProductName | string | as specified | Xe-129 (90%) + N2 | Name of the controlled product, gas, procedure or equipment. |
| 3 | Initial_Pol_Percent | decimal | % | 40 | Xe-129 hyperpolarization level, loss or target parameter. |
| 4 | O2_ppm | decimal | ppm | 10 | Oxygen concentration or flow; a breathing-mixture safety and/or polarization-retention parameter. |
| 5 | Temperature_C | decimal | °C | 20 | Storage, transport or process temperature parameter. |
| 6 | Field_T | decimal | as specified | 1.5 | Magnetic-field or field-homogeneity parameter. |
| 7 | Surface_Factor | decimal | as specified | 0.95 | Controlled input.csv field: Surface Factor. |
| 8 | Target_Time_H | decimal | h | 2 | Time parameter for processing, relaxation, pumping or examination. |
| 9 | Min_Req_Pol | decimal | as specified | 5 | Xe-129 hyperpolarization level, loss or target parameter. |
BatchNumber,ProductName,Initial_Pol_Percent,O2_ppm,Temperature_C,Field_T,Surface_Factor,Target_Time_H,Min_Req_Pol T1-PRED-2026-001,Xe-129 (90%) + N2,40,10,20,1.5,0.95,2,5 T1-PRED-2026-002,Xe-129 (High O2),40,200,20,1.5,0.95,2,5 T1-PRED-2026-003,Xe-129 (Bad Vial),40,10,20,1.5,0.5,2,5
FS — Functional Specification
| ID | Function | Implementation |
|---|---|---|
| FS-001 | CLI execution | T1RelaxationTimePredictor.exe supports demo mode and input.csv output.json mode. |
| FS-002 | CSV import | Read UTF-8 CSV and validate header, column count and order. |
| FS-003 | Schema validation | Validate required values, empties, types and basic plausibility. |
| FS-004 | Domain rule engine | Apply explicit rules for “T1 Relaxation Time Predictor” and locally approved limits. |
| FS-005 | Status aggregation | FAIL for a critical finding; WARNING for a non-critical deviation; PASS for conformity. |
| FS-006 | JSON export | Write source values, applied rules, statuses, warnings, failures and configuration version. |
| FS-007 | Audit support | Retain a result structure suitable for review, investigation, IQ/OQ and change control. |
| FS-008 | Integration contract | LIMS/ELN/MES or an instrument wrapper creates CSV; the utility returns JSON. |
output.json example
{
"utilityId": "t1-relaxation-time-predictor",
"primaryTag": "instrumental",
"overallStatus": "PASS|WARNING|FAIL",
"sourceFile": "input.csv",
"checks": [
{
"parameter": "BatchNumber",
"value": "T1-PRED-2026-001",
"status": "PASS|WARNING|FAIL",
"message": "Rule-based check result"
},
{
"parameter": "ProductName",
"value": "Xe-129 (90%) + N2",
"status": "PASS|WARNING|FAIL",
"message": "Rule-based check result"
},
{
"parameter": "Initial_Pol_Percent",
"value": "40",
"status": "PASS|WARNING|FAIL",
"message": "Rule-based check result"
},
{
"parameter": "O2_ppm",
"value": "10",
"status": "PASS|WARNING|FAIL",
"message": "Rule-based check result"
},
{
"parameter": "Temperature_C",
"value": "20",
"status": "PASS|WARNING|FAIL",
"message": "Rule-based check result"
},
{
"parameter": "Field_T",
"value": "1.5",
"status": "PASS|WARNING|FAIL",
"message": "Rule-based check result"
},
{
"parameter": "Surface_Factor",
"value": "0.95",
"status": "PASS|WARNING|FAIL",
"message": "Rule-based check result"
},
{
"parameter": "Target_Time_H",
"value": "2",
"status": "PASS|WARNING|FAIL",
"message": "Rule-based check result"
}
],
"warnings": [],
"criticalFindings": []
}
OQ/PQ test scenarios
| ID | Scenario | Expected result |
|---|---|---|
| OQ-001 | Valid example row | PASS or an allowed WARNING under local rules. |
| OQ-002 | Required column missing | Schema error; domain checks do not mask it. |
| OQ-003 | Non-numeric value in numeric field | Type-conversion error. |
| OQ-004 | Critical parameter outside its limit | FAIL and a critical finding. |
| OQ-005 | Boundary value | The result follows the configured ≤ / ≥ / < / > operator. |
| PQ-001 | Real site data | Agreed QA/QC review retaining CSV, JSON, version and checksum. |
QA/QC and change control
- Do not change column names without updating the validator, documentation and test set.
- Retain input.csv, output.json, executable version, rule version and checksums.
- Before production use, verify local limits and execute IQ/OQ/PQ or equivalent CSA.
- Changes affecting patient safety, dosimetry, gas composition, polarization or equipment require documented impact assessment.
Included in packages
Rph Hyperpolarized Xenon Lifecycle QC Suite
29 utilities for the hyperpolarized xenon lifecycle: isotope composition and gas purity, SEOP and polarization, T1/storage/transport, safe blending and delivery, MRI/SPECT QC, dosimetry, scavenging, recovery and recycling.
OpenRPH isotope family: xenon and gas tracers
Xe-127, Xe-129 and Xe-133 for ventilation, hyperpolarized imaging, gas QC and safety.
OpenRPH organ/system: pulmonary and ventilation
Lung perfusion, MAA, V/Q, aerosol, xenon ventilation, shunt and pulmonary dosimetry.
OpenRPH use case: xenon, ventilation and medical gases
Xe-129, Xe-133, Xe-127, hyperpolarization, SEOP, T1, mixing, scavenging, transport, recovery and ventilation imaging.
OpenRPH workflow: dosimetry and therapy planning
Activity planning, absorbed dose, organ dose, lung shunt, preplanning and therapy verification.
OpenRPH workflow: imaging QC and quantitative interpretation
Acquisition, uptake, clearance, perfusion, transit, ejection fraction, segmentation and quantitative imaging.
OpenRPH workflow: product release QC
Assay, purity, sterility, endotoxins, pH, impurities, appearance and batch-release checks.
OpenRPH workflow: stability, storage, decay and waste
Kinetic stability, shelf life, decay correction, expiry, storage, trend and radioactive waste.
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