ControlMaterialTrendChecker

Control Material Trend

Liquid Biopsy жидкостная биопсия cfDNA ctDNA CTC exosomes NGS qPCR
Open selection

Utility description: Control Material Trend

Control Material Trend Checker — Statistical QC Monitoring

ℹ️  Utility performs automatic Westgard rules application and QC trend analysis according to CLIA, ISO 15189 and CAP:
     • Reject Rules: 1-3s, 2-2s, R-4s — require immediate analysis stoppage and troubleshooting.
     • Warning Rules: 4-1s, 10x — indicate systematic shift or drift.
     • Statistics: Calculation of Z-score, coefficient of variation (CV), and moving average.
     • Classification: Automatic status determination IN_CONTROL / WARNING / OUT_OF_CONTROL.

⚠️  IMPORTANT: 
     • Violation of 1-3s or 2-2s rule means system is NOT SUITABLE for patient result release.
     • Trends (4-1s, 10x) often precede full out-of-control and require preventive actions.

Usage:
  ControlMaterialTrendChecker.exe                            → demo mode (console output)
  ControlMaterialTrendChecker.exe input.csv output.json      → evaluate your data

Input format:
ControlLot,Analyte,InstrumentID,MeasurementDate,MeasuredValue,TargetMean,TargetSD

Example:
  QC-LOT-A,Glucose,CHEM-01,2026-06-01,101.5,100.0,2.0

📍 Scope of Application (Usage Where):
     • Clinical Laboratories: Daily QC monitoring before result release.
     • IVD Manufacturing: Stability control of reagents and calibrators.
     • CAP/ISO Accreditation: Demonstration of statistical process control system.
     • Deviation Investigation: Retrospective trend analysis for root cause identification.

— WHY IS THIS NEEDED?
Manual control chart review is prone to human factor and fatigue.
Automated Westgard rules application eliminates missed violations.
Proactive trend detection prevents errors BEFORE they affect patients.

⚠️  CRITICAL:
• Reject Rules: 1-3s, 2-2s, R-4s = IMMEDIATE STOPPAGE.
• Warning Rules: 4-1s, 10x = CHECK CALIBRATION AND REAGENTS.
• Target Parameters: Use only validated Mean and SD for each lot.
• Data Integrity: Do not remove QC points from history without documented justification.

Key features:
• Automatic application of 5 Westgard rules
• Z-score and CV calculation per series
• Grouping by lot/analyte/instrument
• Structured report generation
• Compliance with CLIA and ISO 15189

Critical parameters:
• Z-Score: < ±2.0 (warning), < ±3.0 (reject)
• CV: < Acceptable limit for analyte
• Westgard Rules: No reject-rule violations
• N Points: ≥ 20 for reliable statistics

💡 Usage tips:
1. Limit Establishment: Use minimum 20 points to calculate target Mean/SD for new lot.
2. Multi-level Control: Apply rules separately for each control level.
3. Documentation: Record all troubleshooting actions in QC log.
4. Limit Review: Update Mean/SD upon reagent/calibrator change or after maintenance.
5. Training: Personnel must understand difference between random and systematic error.

⚠️ Note: This utility is a statistical quality control tool. It does not replace professional laboratory judgment but provides objective basis for analytical system suitability decisions.

input.csv

ControlLot,Analyte,InstrumentID,MeasurementDate,MeasuredValue,TargetMean,TargetSD
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-01,100.8,100.0,2.0
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-02,99.5,100.0,2.0
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-03,101.2,100.0,2.0
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-04,98.9,100.0,2.0
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-05,100.3,100.0,2.0
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-06,107.0,100.0,2.0

URS & FS — User Requirements and Functional Specification

This document describes the controlled interface and behaviour of ControlMaterialTrendChecker for Control Material Trend Checker.

Domain limits and critical parameters

Key fragments from the source description are shown below. Before production use, limits must be verified against the approved specification, registration dossier and local SOPs.
  • ℹ️ Utility performs automatic Westgard rules application and QC trend analysis according to CLIA, ISO 15189 and CAP:
  • • CAP/ISO Accreditation: Demonstration of statistical process control system.
  • ⚠️ CRITICAL:
  • • Compliance with CLIA and ISO 15189
  • Critical parameters:
  • • Z-Score: < ±2.0 (warning), < ±3.0 (reject)
  • • CV: < Acceptable limit for analyte
  • • N Points: ≥ 20 for reliable statistics
  • 1. Limit Establishment: Use minimum 20 points to calculate target Mean/SD for new lot.
  • 4. Limit Review: Update Mean/SD upon reagent/calibrator change or after maintenance.
  • 5. Training: Personnel must understand difference between random and systematic error.

URS — User Requirements Specification

IDRequirementCriticalityAcceptance criterion
URS-001The utility shall accept an input.csv file for Control Material Trend Checker with headers defined in the data contract.HighThe file is processed without manual header editing.
URS-002The utility shall perform deterministic QC evaluation without machine learning and without probabilistic conformance decisions.HighIdentical input data, rule version and configuration produce reproducible results.
URS-003The utility shall validate mandatory fields, data types, ranges, units and domain plausibility.HighSchema, conversion and range errors are explicitly reported.
URS-004The utility shall apply domain limits and rules from the description, approved specification, registration dossier and local SOPs.HighEach check has PASS/WARNING/FAIL and a clear message.
URS-005The utility shall generate output.json with machine-readable results, source values, warnings, failures and critical findings.HighJSON is suitable for LIMS/ELN/MES integration and QA/QC review.
URS-006The utility shall preserve traceability between batch/sample, input file, applied rules and final status.HighOutput contains identifiers, checked parameters and audit metadata.
URS-007The documentation shall support IQ/OQ/PQ, CSV/CSA and review by internal QA or inspectors.MediumURS, FS, input/output contract and test scenarios are supplied with the utility.
URS-008The utility shall be used as a QC decision-support tool and not as a substitute for approved specifications and QA/QP release decision.MediumDocumentation states change control and limit-verification expectations.

input.csv contract

#FieldTypeSamplePurpose
1ControlLotstring / controlled vocabularyQC-LOT-2026-ABatch or lot identifier used for traceability.
2Analytestring / controlled vocabularyGlucoseControlled input parameter for deterministic QC rules.
3InstrumentIDstring / controlled vocabularyCHEM-ANALYZER-01Controlled input parameter for deterministic QC rules.
4MeasurementDatestring / controlled vocabulary2026-06-01Controlled input parameter for deterministic QC rules.
5MeasuredValuedecimal100.8Controlled input parameter for deterministic QC rules.
6TargetMeanstring / controlled vocabulary100.0Controlled input parameter for deterministic QC rules.
7TargetSDstring / controlled vocabulary2.0Controlled input parameter for deterministic QC rules.
ControlLot,Analyte,InstrumentID,MeasurementDate,MeasuredValue,TargetMean,TargetSD
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-01,100.8,100.0,2.0
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-02,99.5,100.0,2.0
QC-LOT-2026-A,Glucose,CHEM-ANALYZER-01,2026-06-03,101.2,100.0,2.0

Input validation rules

IDFieldRuleCriticality
VR-001ControlLotThe field shall match an approved dictionary or accepted string representation.High
VR-002AnalyteThe field shall match an approved dictionary or accepted string representation.High
VR-003InstrumentIDThe field shall match an approved dictionary or accepted string representation.High
VR-004MeasurementDateThe field shall match an approved dictionary or accepted string representation.Medium
VR-005MeasuredValueThe field shall match an approved dictionary or accepted string representation.Medium
VR-006TargetMeanThe field shall match an approved dictionary or accepted string representation.Medium
VR-007TargetSDThe field shall match an approved dictionary or accepted string representation.Medium

FS — Functional Specification

IDFunctionImplementation
FS-001CLI executionSupport execution modes: demo mode without arguments and production mode input.csv output.json.
FS-002CSV importRead input.csv in UTF-8/CSV-compatible format and validate header and expected columns.
FS-003Schema validationCheck mandatory fields, column count, unknown key fields and empty mandatory values.
FS-004Type conversionConvert numeric, flag and text values; invalid format is recorded as a row-level error.
FS-005Domain rule engineApply rules for Control Material Trend Checker, including critical limits from the description and approved specification.
FS-006Status aggregationProduce final status: FAIL for critical failure, WARNING for non-critical deviation, PASS for conformance.
FS-007JSON exportWrite output.json with detailed checks, source values, warnings, failures and critical findings.
FS-008Audit supportKeep result structure suitable for review, deviation investigation and calculation reproduction.
FS-009Integration contractSupport the scenario LIMS/ELN/MES → input.csv → utility → output.json → portal/admin review.
FS-010Error handlingReturn explicit messages for missing file, empty CSV, invalid schema, output write failure and invalid format.

Example output.json

{
  "utilityId": "controlmaterialtrendchecker",
  "utilityFolder": "ControlMaterialTrendChecker",
  "package": "LiquidBiopsy",
  "overallStatus": "PASS|WARNING|FAIL",
  "sourceFile": "input.csv",
  "processedAtUtc": "2026-06-10T00:00:00Z",
  "checks": [
    {
      "parameter": "ControlLot",
      "value": "QC-LOT-2026-A",
      "status": "PASS|WARNING|FAIL",
      "message": "Deterministic rule-based check result",
      "ruleReference": "FS-RULE-001"
    },
    {
      "parameter": "Analyte",
      "value": "Glucose",
      "status": "PASS|WARNING|FAIL",
      "message": "Deterministic rule-based check result",
      "ruleReference": "FS-RULE-002"
    },
    {
      "parameter": "InstrumentID",
      "value": "CHEM-ANALYZER-01",
      "status": "PASS|WARNING|FAIL",
      "message": "Deterministic rule-based check result",
      "ruleReference": "FS-RULE-003"
    },
    {
      "parameter": "MeasurementDate",
      "value": "2026-06-01",
      "status": "PASS|WARNING|FAIL",
      "message": "Deterministic rule-based check result",
      "ruleReference": "FS-RULE-004"
    },
    {
      "parameter": "MeasuredValue",
      "value": "100.8",
      "status": "PASS|WARNING|FAIL",
      "message": "Deterministic rule-based check result",
      "ruleReference": "FS-RULE-005"
    },
    {
      "parameter": "TargetMean",
      "value": "100.0",
      "status": "PASS|WARNING|FAIL",
      "message": "Deterministic rule-based check result",
      "ruleReference": "FS-RULE-006"
    },
    {
      "parameter": "TargetSD",
      "value": "2.0",
      "status": "PASS|WARNING|FAIL",
      "message": "Deterministic rule-based check result",
      "ruleReference": "FS-RULE-007"
    }
  ],
  "criticalFindings": [],
  "warnings": [],
  "audit": {
    "inputHash": "sha256:<calculated at runtime>",
    "rulesVersion": "<utility executable version>",
    "documentation": "ControlMaterialTrendChecker.documentation.html"
  }
}

Traceability matrix

URSFSTestEvidence
URS-001FS-001, FS-002OQ-001Verify execution and import of valid input.csv.
URS-002FS-005, FS-006OQ-004Repeat the same dataset and compare output.json.
URS-003FS-003, FS-004, FS-010OQ-002, OQ-003Verify missing columns and invalid types.
URS-004FS-005, FS-006OQ-004, PQ-001Verify critical deviations on real/boundary data.
URS-005FS-007, FS-009OQ-005Verify JSON schema and downstream-system suitability.
URS-006FS-008OQ-006Verify identifiers and audit metadata.
URS-007FS-008, FS-010IQ-001, OQ-007Verify documentation completeness and control evidence.
URS-008FS-005, FS-008PQ-002Verify review workflow and no replacement of QA decision.

IQ/OQ/PQ test scenarios

IDScenarioExpected result
IQ-001Verify executable, input.csv, documentation and checksum availability.Delivery set is complete; version is recorded.
OQ-001Valid sample row from input.csv.PASS or acceptable WARNING according to rules.
OQ-002Remove a mandatory CSV column.Schema error or FAIL with missing-column reference.
OQ-003Place a non-numeric value into a numeric field.Type-conversion error with row/field reference.
OQ-004Set a critical parameter outside the limit.FAIL and critical finding.
OQ-005Verify output.json structure.All mandatory sections are present and JSON is valid.
OQ-006Verify batch/sample traceability.Input and result identifiers match.
PQ-001Verify 3–5 real user batches/samples.Result is confirmed by QC/QA review.
PQ-002Verify deviation workflow and manual QA decision.Utility supports review but does not replace approved decision.

QA/QC and change control

  • Do not rename columns without updating validator, documentation and test set.
  • Retain input.csv, output.json, executable version and checksum.
  • Before production use, perform IQ/OQ/PQ or equivalent CSV/CSA verification.
  • Critical limits shall be verified against the approved specification, registration dossier and local SOPs.
  • The utility provides structured QC decision support; final release decision remains with QA/QP and approved procedures.

Included in packages

Liquid Biopsy QC Suite

QC and pre-analytical control package for liquid biopsy workflows: cfDNA/ctDNA, CTC, EV/exosomes, methylation, NGS/qPCR/ddPCR, sample quality, contamination, sensitivity and reporting checks.

Open